##FastQC	0.10.0
>>Basic Statistics	pass
#Measure	Value	
Filename	lane2_Index16_2.fq	
File type	Conventional base calls	
Encoding	Illumina 1.5	
Total Sequences	18318752	
Filtered Sequences	0	
Sequence length	90	
%GC	49	
>>END_MODULE
>>Per base sequence quality	pass
#Base	Mean	Median	Lower Quartile	Upper Quartile	10th Percentile	90th Percentile
1	31.88513163997198	33.0	31.0	34.0	30.0	34.0
2	31.967291112407658	33.0	31.0	34.0	30.0	34.0
3	32.01730909398195	34.0	31.0	34.0	30.0	34.0
4	35.48756389081527	37.0	35.0	37.0	33.0	37.0
5	35.49116697469347	37.0	35.0	37.0	33.0	37.0
6	35.48944818948365	37.0	35.0	37.0	33.0	37.0
7	35.40161098310627	37.0	35.0	37.0	33.0	37.0
8	35.401978639156205	37.0	35.0	37.0	33.0	37.0
9	36.91360770646385	39.0	37.0	39.0	33.0	39.0
10-14	37.30797140547566	39.2	37.2	39.4	33.0	39.4
15-19	38.3523800966354	40.0	38.0	41.0	33.0	41.0
20-24	38.16602393001445	40.0	38.0	41.0	33.0	41.0
25-29	38.068865968598736	40.0	38.0	41.0	33.0	41.0
30-34	37.9551553184409	40.0	37.6	41.0	33.0	41.0
35-39	37.71913750456363	40.0	37.0	41.0	32.0	41.0
40-44	37.330227222902515	39.4	36.2	41.0	31.0	41.0
45-49	36.89919089466356	39.0	35.2	40.8	30.4	41.0
50-54	36.0691815468652	38.0	34.4	40.0	29.4	40.6
55-59	35.9362148797036	37.8	34.4	40.0	29.0	41.0
60-64	35.421748173674715	37.0	34.0	40.0	28.6	41.0
65-69	34.9404004268413	35.8	34.0	39.2	29.0	41.0
70-74	34.13594023217302	35.0	33.4	38.0	28.0	40.4
75-79	33.26023707291851	35.0	33.0	36.6	26.8	39.0
80-84	32.4252655421068	35.0	32.6	35.4	25.8	37.2
85-89	31.551169075273247	35.0	32.0	35.0	24.4	36.2
90	31.032958304146483	35.0	32.0	35.0	23.0	36.0
>>END_MODULE
>>Per sequence quality scores	pass
#Quality	Count
9	1.0
10	138.0
11	1629.0
12	4617.0
13	9363.0
14	15091.0
15	20973.0
16	26696.0
17	31623.0
18	37466.0
19	43806.0
20	52485.0
21	61914.0
22	73143.0
23	89380.0
24	109560.0
25	135490.0
26	167546.0
27	207737.0
28	254548.0
29	311106.0
30	383793.0
31	480258.0
32	609376.0
33	791195.0
34	1070357.0
35	1532414.0
36	2321085.0
37	3362132.0
38	3775851.0
39	2262861.0
40	75118.0
>>END_MODULE
>>Per base sequence content	fail
#Base	G	A	T	C
1	25.29178987504805	11.98380106668398	9.700866756694806	53.023542301573166
2	21.927961587186772	18.78992570152079	35.755528346595014	23.526584364697424
3	25.571648606961126	21.021718393836643	22.45438837324051	30.952244625961722
4	27.727985697900788	27.362789837940642	19.00481992832744	25.904404535831134
5	29.360493100302975	29.592497872071917	21.436183583072435	19.610825444552678
6	24.384546314572283	32.43439295455444	21.787572001397855	21.393488729475422
7	21.572960081805597	18.700863495007557	37.29547643543011	22.430699987756732
8	21.593729685006796	21.987635351207242	29.122260964350676	27.296373999435286
9	21.762776212394346	20.908343303112414	31.456306653279892	25.87257383121335
10-14	24.59550780957282	26.1052035777106	24.636711583319958	24.66257702939662
15-19	24.96368103063727	25.037240388940337	25.036562311625065	24.962516268797327
20-24	24.71153208798317	25.304316027069166	25.395864559283627	24.588287325664034
25-29	24.570415285729318	25.35406704809307	25.32149739579849	24.75402027037912
30-34	24.603098722335908	25.278214365552937	25.260387281607166	24.85829963050399
35-39	24.603100160408466	25.427828248352824	25.23557915925192	24.73349243198679
40-44	24.57057567655554	25.259945322986667	25.379781672788525	24.789697327669273
45-49	24.51333827842274	25.320356211531	25.302361892014474	24.863943618031783
50-54	24.546991913364987	25.407388897917176	25.32250065215503	24.723118536562804
55-59	24.576647025576218	25.327071278195913	25.273674492794406	24.822607203433467
60-64	24.481052050310716	25.34248240077789	25.40064221025532	24.775823338656078
65-69	24.490104859308037	25.45608962772018	25.398006903740654	24.65579860923113
70-74	24.53660004735483	25.40322708753125	25.3001937001916	24.75997916492232
75-79	24.547014924859837	25.33806613383448	25.37598359258172	24.738935348723963
80-84	24.473563563200393	25.465887660886068	25.413851142672744	24.646697633240798
85-89	24.57425600923179	25.433950943363925	25.30782350001319	24.683969547391097
90	24.29095470443838	25.52517208310867	25.545425022118557	24.63844819033439
>>END_MODULE
>>Per base GC content	fail
#Base	%GC
1	78.31533217662121
2	45.45454595188419
3	56.52389323292285
4	53.63239023373192
5	48.97131854485565
6	45.778035044047705
7	44.00366006956233
8	48.89010368444208
9	47.635350043607694
10-14	49.25808483896944
15-19	49.9261972994346
20-24	49.2998194136472
25-29	49.32443555610844
30-34	49.4613983528399
35-39	49.336592592395256
40-44	49.360273004224815
45-49	49.37728189645453
50-54	49.27011044992779
55-59	49.399254229009685
60-64	49.25687538896679
65-69	49.14590346853917
70-74	49.29657921227715
75-79	49.2859502735838
80-84	49.12026119644119
85-89	49.25822555662289
90	48.92940289477277
>>END_MODULE
>>Per sequence GC content	pass
#GC Content	Count
0	21.0
1	17.5
2	16.0
3	21.5
4	31.0
5	43.5
6	50.5
7	72.5
8	112.0
9	144.5
10	159.0
11	195.0
12	273.5
13	389.5
14	563.0
15	825.0
16	1340.5
17	2182.5
18	3586.0
19	6136.0
20	7771.0
21	10349.0
22	17170.5
23	27477.5
24	40985.5
25	59012.5
26	82297.5
27	110387.5
28	140066.0
29	171317.0
30	188277.0
31	205411.0
32	240572.5
33	279281.0
34	321751.0
35	361876.0
36	402729.5
37	450268.5
38	491672.5
39	525574.0
40	543093.0
41	554371.5
42	577615.5
43	601227.0
44	617118.5
45	625287.5
46	626972.5
47	623337.5
48	622710.0
49	624162.5
50	624846.0
51	618015.0
52	610439.0
53	600822.0
54	595612.0
55	595511.0
56	585894.0
57	570897.0
58	552384.0
59	530878.5
60	518743.0
61	503773.5
62	474592.5
63	437666.5
64	393073.5
65	350575.5
66	307693.5
67	263196.0
68	220466.5
69	179795.5
70	159619.0
71	142220.0
72	109913.5
73	83150.5
74	60387.5
75	40965.0
76	26948.5
77	16987.0
78	9699.5
79	5088.0
80	3304.0
81	2493.5
82	1207.5
83	559.0
84	289.5
85	168.0
86	111.0
87	71.5
88	48.5
89	31.5
90	30.0
91	28.5
92	21.5
93	17.5
94	19.0
95	14.0
96	7.0
97	2.5
98	1.0
99	2.5
100	3.0
>>END_MODULE
>>Per base N content	pass
#Base	N-Count
1	0.28719751214493217
2	0.21640666351070204
3	0.2744400928622212
4	0.2979460609543707
5	0.2526536742240956
6	0.1678007322769586
7	0.2146325251851218
8	0.24058407472299423
9	0.22389625668822857
10-14	0.19895460127414794
15-19	0.17332949318818225
20-24	0.202429728837423
25-29	0.03609962076019153
30-34	0.0030406001456867804
35-39	0.003503513776484337
40-44	0.00785206328466044
45-49	0.010155713664336959
50-54	0.005576799118193205
55-59	0.0022970997150897616
60-64	0.008928555831750984
65-69	0.004042851827460735
70-74	1.6267483723782057E-4
75-79	7.533264274771557E-5
80-84	0.0025252811981951607
85-89	7.511428726149031E-4
90	0.0023091092668321507
>>END_MODULE
>>Sequence Length Distribution	pass
#Length	Count
90	1.8318752E7
>>END_MODULE
>>Sequence Duplication Levels	fail
#Total Duplicate Percentage	52.012984518458765
#Duplication Level	Relative count
1	100.0
2	29.884321338510187
3	15.252371612696633
4	9.161229636152584
5	6.290277388624265
6	4.594124004322939
7	3.5904415002201495
8	2.8499379578113118
9	2.38862426449986
10++	26.124764840091263
>>END_MODULE
>>Overrepresented sequences	pass
>>END_MODULE
>>Kmer Content	warn
#Sequence	Count	Obs/Exp Overall	Obs/Exp Max	Max Obs/Exp Position
AAAAA	4821475	3.070908	4.7464724	2
GAAGA	3828625	2.5481753	5.028704	2
CCAGG	3795405	2.537988	5.3018494	1
CTTCT	3999275	2.5059085	5.706508	1
CCTGG	3772485	2.505011	5.978435	1
CTGGA	3628725	2.4038851	8.8986025	1
CTGCT	3616975	2.3330743	5.1942725	1
TCCAG	3574370	2.3218374	5.7068377	2
CTCCT	3582125	2.265669	7.739679	1
CTGGG	3308510	2.2404842	8.520947	1
CAGGA	3316410	2.2124689	5.552442	1
CTTCA	3463465	2.1854658	5.780707	1
CTCCA	3385590	2.1564498	8.36049	1
CCCAG	3282140	2.152094	7.357615	1
CAGAA	3211485	2.0958736	5.1605606	1
CTCTG	3105905	2.0034165	6.37206	1
CTGGC	2815210	1.8693599	5.5703716	1
TGGAA	2788560	1.8429654	5.197999	2
CTGAA	2832645	1.8357012	5.557613	1
CTCAG	2653080	1.7233863	6.2825875	1
CTTTG	2650775	1.6938857	5.0238056	1
CTGGT	2490315	1.6381913	5.1994653	1
CTTGG	2475370	1.6283603	5.4857893	1
CTCCC	2401075	1.5329684	5.020469	1
>>END_MODULE
